To reinforce our team in Bern, we are seeking a
Data Scientist in Image Analysis
Job tasksThe Department for Biomedical Research (DBMR) is launching a new Biological Data Science Hub and invites applications for a Data Scientist specialized in image analysis. This is a unique opportunity to take on a leadership role in shaping the future of data-driven biomedical research at the University of Bern and beyond.
About the Hub
The Biological Data Science Hub has three key missions:
● Education: Empowering labs to adopt cutting-edge data science methods by training PhDs and postdocs and embedding best practices directly in research groups.
● Community: Building a strong data science culture through regular meetings, collaborations with national and international partners, and yearly symposia.
● Open Data: Promoting FAIR data practices, sharing code, and fostering reproducible, cost-efficient research.
As a pillar leader in image analysis, you will play a central role in advancing these missions.
Your Role
We are seeking a scientist with expertise in biological image analysis who can combine technical excellence with vision and initiative. In this role, you will:
● Lead the image analysis pillar of the Hub, bringing independence and initiative.
● Design and implement state-of-the-art pipelines for biological imaging data.
● Curate, collect, and manage datasets, contributing to the creation of a university-wide repository.
● Guide and mentor researchers across DBMR labs in best practices and advanced image-analysis methods.
● Organize training sessions, workshops, and community events.
● Represent the Hub nationally and internationally by promoting our activities at conferences and building collaborations.
● Contribute to setting standards for FAIR and reproducible data science.
Profile requirements
Your Profile
● PhD or MSc in computer science, biomedical image analysis, or a related field.
● Expertise in image data science, including machine learning and deep learning.
● Strong programming skills (Python required; R or similar desirable).
● Experience in HPC/Linux environmentsand data-parallel processing.
● Ability to work independently, take initiative, and lead projects.
● Excellent communication and mentoring skills, with a collaborative mindset.
Desirable:
● Experience with microscopy image analysis (high-content screening, EM, light-sheet, confocal, etc.).
● Familiarity with tools such as Fiji, CellProfiler, Napari.
● Experience in collaborative software development.
● Background in research or clinical data environments.
We Offer
● A 3-year fully funded position (80–100%).
● A leadership role in a newly established, high-impact initiative.
● Opportunities for career development and visibility within Switzerland’s leading biomedical and data science networks (EPFL AI Center, SIB, NCCR RNA & Disease, Zurich Vision Center).
● A dynamic, international, and interdisciplinary environment within the Faculty of Medicine.
● A supportive, collaborative team of experts in AI, data analysis, and computational biology.
● Competitive salary and benefits.
Practical Information
● Start date: As soon as possible
● Contract type 1-year renewable (up to 3 years)
● Activity rate: 80–100%
How to apply
If you are interested in this challenging and highly interesting position, please send your application including CV, letter of motivation and names and contact details of 1-3 referees to [email protected].
